From what I understand, clinics and hospitals treat vitamin D deficiency starting out with D2 because it can safely be given in massive doses (such as 20,000-50,000 IU at a time) whereas there is an upper limit to D3. D2 can quickly raise levels at a very high dose, but I think can leave the body much quicker than D3? As a medical coder I see a lot of D2 injections but it seems like it is a short term treatment, and then is followed up with D3 supplementation once levels are raised.
I supplement a vegan D3 and my levels test normal (40-70 range). I have my D levels checked every six months along with blood calcium and magnesium due to my osteoporosis and being on a very potent medication that requires normal levels of these (they will take me off it if my levels drop too low). I take 1000 IU Nordic Naturals or Vitashine vegan D3. However, in the past I have taken D2 supplements and my levels also tested normal, but for some reason I would get headaches at a higher dose of D2. I am out in the sun biking quite a bit in the summer so tend to slack off on supplementing D some then, but Minnesota winters and being so far north, we HAVE to supplement at least part of the year to maintain more normal levels of D.